A few that I'm curious about:
The disappearance of the inhabitants on Easter Island...and an explanation on how exactly they created those sculptured heads...what are they called...maui?
Another interesting one...how were the pyramids actually built...there's always speculation about that.
Who were the Hyksos of ancient egypt? Were they related somehow to the Hebrews?
Did the ancient Xia dynasty of China actually exist? Chinese historiography insists yes, but where's the evidence?
Where did the Basque people really come from? How is it possible that the language is unrelated to any other in existence?
There are lots of others...I have to go and think!